# first define some colors color id=0 rgb=[1.0,1.0,1.0] color id=1 rgb=[1.0,0.0,0.0] color id=2 rgb=[0.0,1.0,0.0] color id=3 rgb=[0.0,0.0,1.0] color id=4 rgb=[0.5,0.4,0.3] # define the box box cell=[50,50,50] # then some particles particle m=1827.8 q=1.0 r=0.701 p=[0.0,0.0,0.0] x=[0.0,0.0,0.0] c=1 id=1 particle x=[2.5,0.0,0.0] c=0 id=2 particle x=[0.0,2.5,0.0] particle x=[0.0,0.0,2.5] c=2 id=4 particle x=[-2.5,0.0,0.0] c=0 particle x=[0.0,-2.5,0.0] particle x=[0.0,0.0,-2.5] c=2 id=7 scale x=5.0 y=5.0 z=5.0 translate x=-2 y=2 z=2 particle x=[-1,1,1] c=3 id=8 particle x=[1,-1,1] particle x=[1,1,-1] particle x=[-1,-1,1] particle x=[1,-1,-1] particle x=[-1,1,-1] particle x=[-1,-1,-1] particle x=[1,1,1] translate x=2 y=-2 z=2 particle x=[-1,1,1] id=16 particle x=[1,-1,1] particle x=[1,1,-1] particle x=[-1,-1,1] particle x=[1,-1,-1] particle x=[-1,1,-1] particle x=[-1,-1,-1] particle x=[1,1,1] translate x=2 y=2 z=-2 particle x=[-1,1,1] id=24 particle x=[1,-1,1] particle x=[1,1,-1] particle x=[-1,-1,1] particle x=[1,-1,-1] particle x=[-1,1,-1] particle x=[-1,-1,-1] particle x=[1,1,1] translate x=-2 y=2 z=-2 particle x=[-1,1,1] id=32 particle x=[1,-1,1] particle x=[1,1,-1] particle x=[-1,-1,1] particle x=[1,-1,-1] particle x=[-1,1,-1] particle x=[-1,-1,-1] particle x=[1,1,1] translate x=2 y=-2 z=-2 particle x=[-1,1,1] id=40 particle x=[1,-1,1] particle x=[1,1,-1] particle x=[-1,-1,1] particle x=[1,-1,-1] particle x=[-1,1,-1] particle x=[-1,-1,-1] particle x=[1,1,1] translate x=-2 y=-2 z=-2 particle x=[-1,1,1] id=48 particle x=[1,-1,1] particle x=[1,1,-1] particle x=[-1,-1,1] particle x=[1,-1,-1] particle x=[-1,1,-1] particle x=[-1,-1,-1] particle x=[1,1,1] translate x=-2 y=-2 z=2 particle x=[-1,1,1] id=56 particle x=[1,-1,1] particle x=[1,1,-1] particle x=[-1,-1,1] particle x=[1,-1,-1] particle x=[-1,1,-1] particle x=[-1,-1,-1] particle x=[1,1,1] translate x=2 y=2 z=2 rotate deg=45 axis=[1.0,0.0,1.0] particle x=[-1,1,1] c=4 id=64 particle x=[1,-1,1] particle x=[1,1,-1] particle x=[-1,-1,1] particle x=[1,-1,-1] particle x=[-1,1,-1] particle x=[-1,-1,-1] particle x=[1,1,1] # then the interactions interaction harmonic id=5000 f=0.5 r0=2.5 { 7 to 2 1 } interaction rydberg f=4.8286 r0=1.40 exp=2.23 a1=2.282 a2=1.555 a3=0.7533 { 4 7 } interaction harmonic f=0.25 r0=4.5 { 8 to 15 } interaction harmonic f=0.25 r0=4.5 { 16 to 23 } interaction harmonic f=0.25 r0=4.5 { 24 to 31 } interaction harmonic f=0.25 r0=4.5 { 32 to 39 } interaction harmonic f=0.25 r0=4.5 { 40 to 47 } interaction harmonic f=0.25 r0=4.5 { 48 to 55 } interaction harmonic f=0.25 r0=4.5 { 56 to 63 } interaction harmonic f=0.25 r0=4.5 { 64 to 71 } interaction lennardjones f=0.125 r0=4.5 { all } # interaction morse f=1.0 r0=1.0 exp=1.0 { } # interaction gravity f=1.0 { } # interaction coulomb f=1.0 { } # set some conformation data if needed conformation n=250 error=1.0E-04 maxstep=0.5 # setup some temperature temperature k=3.166829379841521e-06 initial=273 # and finaly the dynamics statement dynamics dt=4.13411 tend=4134110.5461 t=0.0 error=3.67493E-6